iPiG - Integrating PSMs Into Genome browser visualizations

command:
 ipig <psm file>|-g|-c|-cg [<config file>]

parameters:
 <psm file>         indicates the file with the 
                    peptide spectrum matches (mzid/txt)	
 
 -g, -gui           starts the graphical user interface of iPiG
 
 -c, -control       starts the gene control, necessary files have 
                    to be indicated in the configuration file
 
 -cg, -controlgui   starts the graphical user interface of the gene control
 
 -d, -downloader    starts the download gui
 
 <config file>      a different configuration file can be indicated 
                    (otherwise ipig.conf is loaded by default)
	
additional requirements:
 using a non-gui mode, a config file (ipig.conf by default) has to contain 
 several additional parameters, e.g. indicating the reference genome etc.
 
 in a gui mode (-g and -cg), additional parameters can be indicated two ways, 
 within the interface or with a config file as well.
 
 have a look into readme.txt and ipig.conf for examples and 
 more details about the additional parameters