Class jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest

all > jalview.fts.threedbeacons > TDBeaconsFTSRestClientTest

tests

failures

ignored

0.306s

duration

100%

successful

Tests
Standard output
Standard error

Tests

Test	Duration	Result
coverageForEqualsAndHashFunction	0s	passed
getAllFTSDataColumns	0s	passed
getColumnClassTest	0s	passed
getColumnMinWidthTest	0s	passed
getDataColumnByNameOrCode	0s	passed
getDataColumnGroupById	0s	passed
getDataColumnsFieldsAsCommaDelimitedString	0s	passed
getDefaultResponsePageSize	0s	passed
getPrimaryKeyColumIndexTest	0s	passed
getPrimaryKeyColumn	0.001s	passed
getSearchableDataColumns	0.001s	passed
getTDBIdColumIndexTest	0.001s	passed
testMockTDBRequest	0.303s	passed

Standard output

[UniProt Accession]
UniProt Accession
wantedFields >>[Model id, Url, Provider, Model Category]
Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@4ae5466f
Attempting to connect with GLprobsWS...
https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/api/uniprot/summary/P00000.json
request : 
https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/api/uniprot/summary/P38398.json
Search summary : 
[4igk	https://www.ebi.ac.uk/pdbe/static/entry/4igk_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 1t15	https://www.ebi.ac.uk/pdbe/static/entry/1t15_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 4ifi	https://www.ebi.ac.uk/pdbe/static/entry/4ifi_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 1t29	https://www.ebi.ac.uk/pdbe/static/entry/1t29_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 3pxb	https://www.ebi.ac.uk/pdbe/static/entry/3pxb_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 4y2g	https://www.ebi.ac.uk/pdbe/static/entry/4y2g_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 1y98	https://www.ebi.ac.uk/pdbe/static/entry/1y98_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 1jnx	https://www.ebi.ac.uk/pdbe/static/entry/1jnx_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 3pxa	https://www.ebi.ac.uk/pdbe/static/entry/3pxa_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 3k0h	https://www.ebi.ac.uk/pdbe/static/entry/3k0h_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 3k0k	https://www.ebi.ac.uk/pdbe/static/entry/3k0k_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 1n5o	https://www.ebi.ac.uk/pdbe/static/entry/1n5o_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 3pxc	https://www.ebi.ac.uk/pdbe/static/entry/3pxc_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 3pxd	https://www.ebi.ac.uk/pdbe/static/entry/3pxd_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 1t2u	https://www.ebi.ac.uk/pdbe/static/entry/1t2u_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 3k15	https://www.ebi.ac.uk/pdbe/static/entry/3k15_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 3pxe	https://www.ebi.ac.uk/pdbe/static/entry/3pxe_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 3k16	https://www.ebi.ac.uk/pdbe/static/entry/3k16_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 4ofb	https://www.ebi.ac.uk/pdbe/static/entry/4ofb_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 3coj	https://www.ebi.ac.uk/pdbe/static/entry/3coj_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 7lyb	https://www.ebi.ac.uk/pdbe/static/entry/7lyb_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 1t2v	https://www.ebi.ac.uk/pdbe/static/entry/1t2v_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 4y18	https://www.ebi.ac.uk/pdbe/static/entry/4y18_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 4jlu	https://www.ebi.ac.uk/pdbe/static/entry/4jlu_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 4u4a	https://www.ebi.ac.uk/pdbe/static/entry/4u4a_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 2ing	https://www.ebi.ac.uk/pdbe/static/entry/2ing_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 7jzv	https://www.ebi.ac.uk/pdbe/static/entry/7jzv_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 6g2i	https://www.ebi.ac.uk/pdbe/static/entry/6g2i_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 1jm7	https://www.ebi.ac.uk/pdbe/static/entry/1jm7_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, 1oqa	https://www.ebi.ac.uk/pdbe/static/entry/1oqa_updated.cif	PDBe	EXPERIMENTALLY DETERMINED	, P38398_1646-1859:6g2i.1.K	https://swissmodel.expasy.org/3d-beacons/uniprot/P38398.pdb?range=1646-1859&template=6g2i.1.K&provider=swissmodel	SWISS-MODEL	TEMPLATE-BASED	, P38398_1-103:1jm7.1.A	https://swissmodel.expasy.org/3d-beacons/uniprot/P38398.pdb?range=1-103&template=1jm7.1.A&provider=swissmodel	SWISS-MODEL	TEMPLATE-BASED	, AF-P38398-F1	https://alphafold.ebi.ac.uk/files/AF-P38398-F1-model_v4.cif	AlphaFold DB	AB-INITIO	, P38398	https://alphafill.eu/v1/aff/P38398	AlphaFill	TEMPLATE-BASED	, ma-t3vr3-532	https://modelarchive.org/doi/10.5452/ma-t3vr3-532.cif	ModelArchive	AB-INITIO	, ma-t3vr3-527	https://modelarchive.org/doi/10.5452/ma-t3vr3-527.cif	ModelArchive	AB-INITIO	, ma-t3vr3-530	https://modelarchive.org/doi/10.5452/ma-t3vr3-530.cif	ModelArchive	AB-INITIO	, ma-t3vr3-528	https://modelarchive.org/doi/10.5452/ma-t3vr3-528.cif	ModelArchive	AB-INITIO	, ma-t3vr3-531	https://modelarchive.org/doi/10.5452/ma-t3vr3-531.cif	ModelArchive	AB-INITIO	, ma-t3vr3-535	https://modelarchive.org/doi/10.5452/ma-t3vr3-535.cif	ModelArchive	AB-INITIO	, ma-t3vr3-529	https://modelarchive.org/doi/10.5452/ma-t3vr3-529.cif	ModelArchive	AB-INITIO	, ma-t3vr3-534	https://modelarchive.org/doi/10.5452/ma-t3vr3-534.cif	ModelArchive	AB-INITIO	, ma-t3vr3-496	https://modelarchive.org/doi/10.5452/ma-t3vr3-496.cif	ModelArchive	AB-INITIO	, ma-t3vr3-533	https://modelarchive.org/doi/10.5452/ma-t3vr3-533.cif	ModelArchive	AB-INITIO	, ma-t3vr3-523	https://modelarchive.org/doi/10.5452/ma-t3vr3-523.cif	ModelArchive	AB-INITIO	, ma-t3vr3-541	https://modelarchive.org/doi/10.5452/ma-t3vr3-541.cif	ModelArchive	AB-INITIO	, ma-t3vr3-542	https://modelarchive.org/doi/10.5452/ma-t3vr3-542.cif	ModelArchive	AB-INITIO	, ma-t3vr3-069	https://modelarchive.org/doi/10.5452/ma-t3vr3-069.cif	ModelArchive	AB-INITIO	, ma-t3vr3-537	https://modelarchive.org/doi/10.5452/ma-t3vr3-537.cif	ModelArchive	AB-INITIO	, ma-t3vr3-357	https://modelarchive.org/doi/10.5452/ma-t3vr3-357.cif	ModelArchive	AB-INITIO	, ma-t3vr3-525	https://modelarchive.org/doi/10.5452/ma-t3vr3-525.cif	ModelArchive	AB-INITIO	, ma-t3vr3-356	https://modelarchive.org/doi/10.5452/ma-t3vr3-356.cif	ModelArchive	AB-INITIO	, ma-t3vr3-539	https://modelarchive.org/doi/10.5452/ma-t3vr3-539.cif	ModelArchive	AB-INITIO	, ma-t3vr3-526	https://modelarchive.org/doi/10.5452/ma-t3vr3-526.cif	ModelArchive	AB-INITIO	, ma-t3vr3-250	https://modelarchive.org/doi/10.5452/ma-t3vr3-250.cif	ModelArchive	AB-INITIO	, ma-t3vr3-202	https://modelarchive.org/doi/10.5452/ma-t3vr3-202.cif	ModelArchive	AB-INITIO	, ma-t3vr3-524	https://modelarchive.org/doi/10.5452/ma-t3vr3-524.cif	ModelArchive	AB-INITIO	, ma-t3vr3-544	https://modelarchive.org/doi/10.5452/ma-t3vr3-544.cif	ModelArchive	AB-INITIO	, ma-t3vr3-543	https://modelarchive.org/doi/10.5452/ma-t3vr3-543.cif	ModelArchive	AB-INITIO	, ma-t3vr3-538	https://modelarchive.org/doi/10.5452/ma-t3vr3-538.cif	ModelArchive	AB-INITIO	, ma-t3vr3-203	https://modelarchive.org/doi/10.5452/ma-t3vr3-203.cif	ModelArchive	AB-INITIO	, ma-t3vr3-536	https://modelarchive.org/doi/10.5452/ma-t3vr3-536.cif	ModelArchive	AB-INITIO	, ma-t3vr3-540	https://modelarchive.org/doi/10.5452/ma-t3vr3-540.cif	ModelArchive	AB-INITIO	]

Standard error

java.lang.Exception: Couldn't find data column with name : qmean_avg_local_score
	at jalview.fts.core.FTSRestClient.getDataColumnByNameOrCode(FTSRestClient.java:432)
	at jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest.testMockTDBRequest(TDBeaconsFTSRestClientTest.java:390)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85)
	at org.testng.internal.Invoker.invokeMethod(Invoker.java:648)
	at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:834)
	at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1142)
	at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124)
	at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108)
	at org.testng.TestRunner.privateRun(TestRunner.java:771)
	at org.testng.TestRunner.run(TestRunner.java:621)
	at org.testng.SuiteRunner.runTest(SuiteRunner.java:357)
	at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352)
	at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310)
	at org.testng.SuiteRunner.run(SuiteRunner.java:259)
	at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
	at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86)
	at org.testng.TestNG.runSuitesSequentially(TestNG.java:1176)
	at org.testng.TestNG.runSuitesLocally(TestNG.java:1101)
	at org.testng.TestNG.run(TestNG.java:1009)
	at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:145)
	at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:92)
	at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:62)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base/java.lang.reflect.Method.invoke(Method.java:566)
	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
	at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
	at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:94)
	at com.sun.proxy.$Proxy2.stop(Unknown Source)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:193)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:129)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:100)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:60)
	at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56)
	at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:113)
	at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:65)
	at worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69)
	at worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)
Jul 02, 2023 10:11:53 AM compbio.ws.client.Jws2Client connect
INFO: Connected successfully!