Class jalview.gui.StructureChooserTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| displayTDBQueryTest | 0.291s | passed |
| fetchStructuresInfoMockedTest | 0.318s | passed |
| populateFilterComboBoxTest | 0.171s | passed |
| sanitizeSeqNameTest | 0.001s | passed |
Standard output
registry.getSupportedServices: [MSAprobsWS, DisemblWS, TcoffeeWS, RNAalifoldWS, MafftWS, IUPredWS, GlobPlotWS, ProbconsWS, AAConWS, JronnWS, ClustalWS, MuscleWS, ClustalOWS, GLprobsWS] Attempting to connect with MafftWS... https://www.ebi.ac.uk/pdbe/search/pdb/select?wt=json&fl=pdb_id,title,experimental_method,resolution&rows=500&start=0&q=(uniprot_accession:P38398+OR+uniprot_id:P38398)+AND+molecule_sequence:%5B''+TO+*%5D+AND+status:REL&sort=overall_quality+desc query >>>>>>> jalview.fts.core.FTSRestRequest@31560a27 >>> JOption Message : 400 response (Mocked) Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@39160d24 https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/api/uniprot/summary/P38398.json https://www.ebi.ac.uk/pdbe/search/pdb/select?wt=json&fl=pdb_id,title,experimental_method,resolution&rows=500&start=0&q=(4igk+OR+7lyb+OR+3k0h+OR+3k0k+OR+1t15+OR+3pxc+OR+3pxd+OR+3pxe+OR+1jm7+OR+7jzv+OR+3pxa+OR+3pxb+OR+1y98+OR+1n5o+OR+4ifi+OR+4y2g+OR+3k15+OR+3k16+OR+4jlu+OR+2ing+OR+4ofb+OR+6g2i+OR+3coj+OR+1jnx+OR+4y18+OR+4u4a+OR+1oqa+OR+1t29+OR+1t2u+OR+1t2v)+AND+molecule_sequence:%5B''+TO+*%5D+AND+status:REL&sort= query >>>>>>> jalview.fts.core.FTSRestRequest@20e31d20 Attempting to connect with MuscleWS... https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/api/uniprot/summary/P38398.json https://www.ebi.ac.uk/pdbe/search/pdb/select?wt=json&fl=pdb_id,title,experimental_method,resolution&rows=500&start=0&q=(4igk+OR+7lyb+OR+3k0h+OR+3k0k+OR+1t15+OR+3pxc+OR+3pxd+OR+3pxe+OR+1jm7+OR+7jzv+OR+3pxa+OR+3pxb+OR+1y98+OR+1n5o+OR+4ifi+OR+4y2g+OR+3k15+OR+3k16+OR+4jlu+OR+2ing+OR+4ofb+OR+6g2i+OR+3coj+OR+1jnx+OR+4y18+OR+4u4a+OR+1oqa+OR+1t29+OR+1t2u+OR+1t2v)+AND+molecule_sequence:%5B''+TO+*%5D+AND+status:REL&sort= query >>>>>>> jalview.fts.core.FTSRestRequest@5d95c7c2 Discovered service: http://www.compbio.dundee.ac.uk/jabaws jalview.ws.jws2.jabaws2.Jws2Instance@59d41672 https://www.ebi.ac.uk/pdbe/search/pdb/select?wt=json&fl=pdb_id,title,experimental_method,resolution&rows=500&start=0&q=(pdb_id:1tim)+AND+molecule_sequence:%5B''+TO+*%5D+AND+status:REL&sort=overall_quality+desc query >>>>>>> jalview.fts.core.FTSRestRequest@23f6732a >>> JOption Message : 400 response (Mocked) Attempting to connect with ClustalWS... Items (no data, no cache):
Standard error
Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change Rebuild WS Menu for service change DEBUG - Displaying news. Jul 02, 2023 10:12:01 AM compbio.ws.client.Jws2Client connectToRegistry INFO: Connected to RegistryWS successfully! DEBUG - Scanning news items: newsnew=false and lastDate is Fri Jun 30 20:04:22 CEST 2023 DEBUG - Saved last read date as 30 Jun 2023, 20:04:22 java.lang.Exception: 400 response (Mocked) at jalview.fts.service.pdb.PDBFTSRestClient.executeRequest(PDBFTSRestClient.java:232) at jalview.gui.structurechooser.PDBStructureChooserQuerySource.fetchStructuresMetaData(PDBStructureChooserQuerySource.java:254) at jalview.gui.StructureChooser.fetchStructuresMetaData(StructureChooser.java:479) at jalview.gui.StructureChooser.initialStructureDiscovery(StructureChooser.java:242) at jalview.gui.StructureChooser$2.run(StructureChooser.java:209) at java.base/java.lang.Thread.run(Thread.java:829) DEBUG - Scanning news items: newsnew=false and lastDate is Fri Jun 30 20:04:22 CEST 2023 DEBUG - Saved last read date as 30 Jun 2023, 20:04:22 DEBUG - Scanning news items: newsnew=false and lastDate is Fri Jun 30 20:04:22 CEST 2023 DEBUG - Saved last read date as 30 Jun 2023, 20:04:22 Jul 02, 2023 10:12:01 AM compbio.ws.client.Jws2Client connect INFO: Connected successfully! DEBUG - Not enabling Google Tracking. DEBUG - Scanning news items: newsnew=false and lastDate is Fri Jun 30 20:04:22 CEST 2023 DEBUG - Saved last read date as 30 Jun 2023, 20:04:22 DEBUG - Scanning news items: newsnew=false and lastDate is Fri Jun 30 20:04:22 CEST 2023 DEBUG - Saved last read date as 30 Jun 2023, 20:04:22 DEBUG - Scanning news items: newsnew=false and lastDate is Fri Jun 30 20:04:22 CEST 2023 DEBUG - Saved last read date as 30 Jun 2023, 20:04:22 Jul 02, 2023 10:12:01 AM compbio.ws.client.Jws2Client connect INFO: Connected successfully! java.lang.Exception: 400 response (Mocked) at jalview.fts.service.pdb.PDBFTSRestClient.executeRequest(PDBFTSRestClient.java:232) at jalview.gui.structurechooser.PDBStructureChooserQuerySource.fetchStructuresMetaData(PDBStructureChooserQuerySource.java:254) at jalview.gui.StructureChooser.fetchStructuresMetaData(StructureChooser.java:479) at jalview.gui.StructureChooser.initialStructureDiscovery(StructureChooser.java:242) at jalview.gui.StructureChooser$2.run(StructureChooser.java:209) at java.base/java.lang.Thread.run(Thread.java:829)